usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 16.5921351351351 -14.0093243243243 22.8074054054054 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 986 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 542 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 542 Number of spheres polar: 223, nonpolar: 214, out of current total: 542 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.64474 26.43966 -23.19984 -4.37467 12.81044 32.29163 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 293 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 253 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 223 Spheres center of coords (x y z): 17.0916556053812 -15.4447951569507 22.0945579820628 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.69686238076839 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 41 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 37