usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 17.07571875 -14.40253125 23.4579375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1235 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 724 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 715 Number of spheres polar: 184, nonpolar: 300, out of current total: 715 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.10918 26.78658 -24.27672 -4.48614 13.47263 33.22240 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 256 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 214 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 189 Spheres center of coords (x y z): 16.4630901587302 -15.5799487301587 21.9495798412698 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.09356449660293 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 32