usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 17.07571875 -14.40253125 23.4579375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1235 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 724 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 715 Number of spheres polar: 184, nonpolar: 300, out of current total: 715 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.10918 26.78658 -24.27672 -4.48614 13.47263 33.22240 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 408 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 367 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 330 Spheres center of coords (x y z): 16.4549634242424 -15.3060880606061 21.5745071212121 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.03141933401598 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 32