usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 16.5014411764706 -14.3623235294118 23.5453823529412 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 913 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 474 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 473 Number of spheres polar: 160, nonpolar: 212, out of current total: 473 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.51484 26.42599 -24.35147 -4.39690 13.57747 33.52900 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 276 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 236 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 216 Spheres center of coords (x y z): 16.7654853240741 -15.9441015277778 23.5226663888889 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.51800768449279 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 34