usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 17.0903928571429 -14.0007857142857 22.8919642857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1499 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 903 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 901 Number of spheres polar: 293, nonpolar: 386, out of current total: 901 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.10414 27.08361 -23.80876 -4.30704 12.90925 32.88877 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 499 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 423 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 397 Spheres center of coords (x y z): 16.8125974307305 -15.8235754911839 21.9521209823678 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.62147795693296 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 28