usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 25.7360666666667 33.9439 21.2951666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1273 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 728 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 728 Number of spheres polar: 319, nonpolar: 313, out of current total: 728 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 15.75563 35.73396 24.06031 43.92552 11.39300 31.27383 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 227 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 178 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 168 Spheres center of coords (x y z): 26.8870717261905 33.7079340476191 22.617903452381 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.6104817093278 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 30