usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 19.9031333333333 -15.5589333333333 22.5776666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1251 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 819 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 806 Number of spheres polar: 241, nonpolar: 319, out of current total: 806 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.06034 29.86957 -25.39869 -5.56851 12.57799 32.57312 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 280 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 231 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 198 Spheres center of coords (x y z): 17.7820327272727 -15.8517078282828 20.8426233333333 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.48123720545387 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 19 Final number of spheres that are from crystallographic ligand: 15