usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): -14.06646875 68.14603125 173.773780625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 841 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 499 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 499 Number of spheres polar: 157, nonpolar: 211, out of current total: 499 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -24.00747 -4.45580 58.17121 78.03896 163.86104 183.72813 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 305 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 268 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 224 Spheres center of coords (x y z): -12.2512488392857 65.772845 172.639507276786 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.08432687048387 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 32