usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 17.3757575757576 -12.3676060606061 21.6712121212121 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1295 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 740 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 738 Number of spheres polar: 226, nonpolar: 313, out of current total: 738 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.40324 27.34923 -22.12254 -2.40749 11.75095 31.66166 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 258 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 212 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 194 Spheres center of coords (x y z): 17.7647807216495 -15.3405210309278 21.9709897938144 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.39314681843056 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 33