usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 16.778 -14.5759117647059 21.2281176470588 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1587 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 833 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 827 Number of spheres polar: 330, nonpolar: 283, out of current total: 827 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.79418 26.48222 -24.44766 -4.63380 11.28730 31.19614 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 461 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 403 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 335 Spheres center of coords (x y z): 17.2789473432836 -15.4868221492537 20.1223749850746 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.30270608905052 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 34