usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 9.85172222222222 20.0688333333333 49.8894444444444 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 898 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 654 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 650 Number of spheres polar: 271, nonpolar: 214, out of current total: 650 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.13923 19.84142 10.55686 29.98640 40.01245 59.87413 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 227 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 183 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 148 Spheres center of coords (x y z): 6.70589202702702 19.3135911486487 51.8836127027027 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.4400500933086 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 18