usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 9.80914285714286 21.7732857142857 49.2561428571429 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 902 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 671 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 671 Number of spheres polar: 226, nonpolar: 271, out of current total: 671 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.12358 19.80774 11.93537 29.60965 39.47000 59.24673 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 372 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 326 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 267 Spheres center of coords (x y z): 6.99366868913858 19.3799443820225 51.7633438202247 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.08471778405624 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 14