usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 17.1994117647059 -12.4110294117647 21.8120294117647 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1517 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 897 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 896 Number of spheres polar: 293, nonpolar: 330, out of current total: 896 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.21577 27.03318 -22.39902 -3.50785 11.84735 31.78448 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 514 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 437 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 412 Spheres center of coords (x y z): 17.4090141019418 -15.2573715291262 21.4784984951456 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.82358027290003 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 34