usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 17.3955151515152 -12.4649090909091 21.6808787878788 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1482 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 969 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 964 Number of spheres polar: 330, nonpolar: 412, out of current total: 964 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.43268 27.18923 -22.44835 -3.50056 11.68994 31.62214 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 305 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 254 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 244 Spheres center of coords (x y z): 17.1613133196721 -15.222721352459 21.2872108606557 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.76511559308267 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 33