usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 17.3955151515152 -12.4649090909091 21.6808787878788 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1482 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 969 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 964 Number of spheres polar: 330, nonpolar: 412, out of current total: 964 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.43268 27.18923 -22.44835 -3.50056 11.68994 31.62214 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 505 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 448 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 430 Spheres center of coords (x y z): 17.2151836976744 -14.8613090465116 21.0149154883721 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.5914144564095 Final number of output spheres is: 60 Number of polar spheres: 25 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 33