usefragsph not on There are 42 ligand heavy atoms Ligand center of coords (x y z): 17.1170714285714 -13.476380952381 22.0421904761905 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1464 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 913 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 905 Number of spheres polar: 288, nonpolar: 369, out of current total: 905 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.18691 26.84697 -23.22552 -3.62224 12.06815 32.03756 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 506 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 433 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 414 Spheres center of coords (x y z): 17.155894178744 -15.1434993961353 20.9408584057971 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.11426941140893 Final number of output spheres is: 60 Number of polar spheres: 24 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 42