usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 17.1374411764706 -13.7095 22.9610588235294 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1368 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 838 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 830 Number of spheres polar: 279, nonpolar: 331, out of current total: 830 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.30194 27.12228 -23.13258 -3.75064 12.97938 32.87503 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 445 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 397 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 372 Spheres center of coords (x y z): 17.3057561021505 -15.1893427688172 22.1291335752688 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.1758968941281 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 34