usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 16.7224571428571 -14.1818285714286 22.9065142857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1318 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 843 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 838 Number of spheres polar: 206, nonpolar: 423, out of current total: 838 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.74404 26.66277 -24.03900 -4.24996 12.91159 32.85870 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 470 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 421 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 395 Spheres center of coords (x y z): 17.3129383291139 -15.4716121518987 22.2087275949367 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.32808572305303 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 35