usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 17.1482727272727 -13.8038181818182 22.9858484848485 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 998 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 530 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 530 Number of spheres polar: 215, nonpolar: 204, out of current total: 530 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.22369 26.37054 -23.37121 -4.54216 13.02450 32.92645 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 194 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 166 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 151 Spheres center of coords (x y z): 17.2034282119205 -15.7287576821192 22.2306626490066 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.98149098368894 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 33