usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 25.2503 34.1195333333333 21.7143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 973 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 523 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 523 Number of spheres polar: 235, nonpolar: 212, out of current total: 523 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 15.25295 35.24575 24.28476 44.11162 11.73137 31.29329 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 173 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 144 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 113 Spheres center of coords (x y z): 24.1928800884956 33.7886020353982 23.2378837168141 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.95948016693784 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 30