usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 16.365375 -14.18009375 22.72615625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1095 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 647 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 642 Number of spheres polar: 256, nonpolar: 269, out of current total: 642 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.42924 26.35516 -23.38059 -4.33599 12.73222 32.71850 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 336 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 279 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 248 Spheres center of coords (x y z): 16.8790648790323 -15.5118772580645 22.3085497580645 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.05194494441574 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 32