usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 16.8966285714286 -14.2199428571429 22.1111142857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1006 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 576 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 576 Number of spheres polar: 227, nonpolar: 223, out of current total: 576 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.89798 26.88898 -23.10646 -4.38820 12.11851 32.02765 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 313 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 247 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 229 Spheres center of coords (x y z): 16.8381179912664 -15.6685713537118 22.0533037991266 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.55068723022238 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 35