usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 16.503125 19.86909375 22.821875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1373 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 835 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 834 Number of spheres polar: 295, nonpolar: 344, out of current total: 834 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.50346 26.23131 9.91237 29.81670 12.85723 32.73904 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 447 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 377 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 359 Spheres center of coords (x y z): 16.7711145682451 18.0812722005571 21.7318633426184 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.18121214250488 Final number of output spheres is: 60 Number of polar spheres: 24 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 32