usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 16.1951764705882 19.9751470588235 22.7503235294118 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1484 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 947 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 944 Number of spheres polar: 336, nonpolar: 356, out of current total: 944 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.31460 26.05826 10.34349 29.97431 12.76340 32.69170 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 308 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 254 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 224 Spheres center of coords (x y z): 16.5847986160714 17.7727112053572 21.2358670982143 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.49898791301627 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 34