usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 16.4479696969697 20.1238787878788 22.7365151515151 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1325 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 784 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 783 Number of spheres polar: 252, nonpolar: 306, out of current total: 783 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.44872 26.41783 10.15750 29.92953 12.74860 32.68011 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 449 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 393 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 348 Spheres center of coords (x y z): 17.0852170977012 18.1121225287356 21.7943761781609 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.16873211265514 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 33