usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 13.2529459459459 -14.8251891891892 15.3495945945946 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1370 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 877 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 873 Number of spheres polar: 290, nonpolar: 336, out of current total: 873 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.26869 23.22724 -24.18634 -4.85295 5.35438 25.31143 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 311 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 248 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 221 Spheres center of coords (x y z): 12.3015746153846 -15.2176806334842 16.7637938914027 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.83806572068253 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 37