usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 12.1930625 -13.2083125 12.6195625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1440 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 864 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 857 Number of spheres polar: 276, nonpolar: 371, out of current total: 857 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 2.25066 21.68949 -23.20820 -3.28766 2.64306 22.61674 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 271 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 228 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 216 Spheres center of coords (x y z): 11.9663620833333 -15.9293254166667 12.46014125 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.65178816367232 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 32