usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 11.9945161290323 -13.1135806451613 12.7617096774194 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1191 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 735 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 733 Number of spheres polar: 299, nonpolar: 286, out of current total: 733 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 2.19792 21.88315 -22.70024 -3.94929 2.77838 22.71539 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 412 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 341 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 317 Spheres center of coords (x y z): 11.1616953943218 -16.0122521451104 12.4346655835962 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.32172002898755 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 31