usefragsph not on
There are 37 ligand heavy atoms
Ligand center of coords (x y z): 5.56618918918919 20.5918648648649 48.6553243243243
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1306
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 823
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 820
Number of spheres polar: 238, nonpolar: 342, out of current total: 820
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.27532 15.50644 10.88424 30.20040 38.77671 58.64311
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 471
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 417
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 384
Spheres center of coords (x y z): 5.41396296875 18.2500865885417 49.4728356510416
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.24341066452782
Final number of output spheres is: 60
Number of polar spheres: 15
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 14
Final number of spheres that are from crystallographic ligand: 37