usefragsph not on
There are 9 ligand heavy atoms
Ligand center of coords (x y z): 9.53677777777778 23.2564444444445 48.3297777777778
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 798
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 561
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 561
Number of spheres polar: 274, nonpolar: 158, out of current total: 561
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.24967 19.39415 13.31009 29.89841 38.33598 58.26602
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 186
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 144
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 115
Spheres center of coords (x y z): 5.90304234782609 19.5267495652174 50.4389104347826
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.6522816387826
Final number of output spheres is: 45
Number of polar spheres: 16
Number of nonpolar spheres: 17
Number of spheres that are near neither polar nor nonpolar receptor atoms: 12
Final number of spheres that are from crystallographic ligand: 9