usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 17.00290625 -12.44175 21.47921875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1434 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 804 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 789 Number of spheres polar: 181, nonpolar: 354, out of current total: 789 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.08327 26.98452 -22.44067 -2.58895 11.49774 31.39756 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 283 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 233 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 203 Spheres center of coords (x y z): 17.2478981280788 -15.3921326600985 20.6269579802955 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.5127850609363 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 32