usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 17.0631818181818 -12.452696969697 21.7582424242424 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1475 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 852 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 851 Number of spheres polar: 244, nonpolar: 366, out of current total: 851 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.07435 26.92810 -22.26455 -3.19875 11.76542 31.73700 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 480 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 424 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 391 Spheres center of coords (x y z): 17.3875360358056 -14.8220243478261 21.1961483120205 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.30586527206739 Final number of output spheres is: 60 Number of polar spheres: 13 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 33