usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 17.0789375 -12.28634375 21.60896875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1336 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 826 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 808 Number of spheres polar: 231, nonpolar: 358, out of current total: 808 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.14928 27.04241 -21.80273 -2.36905 11.62313 31.52453 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 433 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 378 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 343 Spheres center of coords (x y z): 17.5411586588921 -15.0953358892128 21.035301574344 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.36778867361882 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 41 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 32