usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 16.24721875 20.07840625 22.80315625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1436 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 869 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 863 Number of spheres polar: 301, nonpolar: 357, out of current total: 863 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.24903 26.03297 10.19868 30.07785 12.83102 32.57009 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 280 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 235 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 215 Spheres center of coords (x y z): 16.9594656744186 17.7829706976744 22.2185520465116 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.22708288096121 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 32