usefragsph not on There are 44 ligand heavy atoms Ligand center of coords (x y z): 16.2231363636364 -14.5610909090909 22.3991363636364 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1064 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 598 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 597 Number of spheres polar: 228, nonpolar: 215, out of current total: 597 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.32545 25.97280 -23.82900 -4.57591 12.40026 32.32569 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 346 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 296 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 265 Spheres center of coords (x y z): 15.952398 -14.9517972075472 22.1272821509434 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.26451560008699 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 44