usefragsph not on
There are 30 ligand heavy atoms
Ligand center of coords (x y z): 140.347765333333 53.0323333333333 20.4731
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1001
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 677
WARNING: removing a crystallographic sphere that is distance 1.10447325006086 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 676
Number of spheres polar: 326, nonpolar: 249, out of current total: 676
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 130.61345 150.28116 43.53772 62.87762 10.55321 30.33751
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 219
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 166
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 149
Spheres center of coords (x y z): 140.381241275168 54.7697608724832 20.597164966443
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.18539387638395
Final number of output spheres is: 45
Number of polar spheres: 20
Number of nonpolar spheres: 21
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 29