usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 6.32478571428571 19.856 49.3614285714286
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1273
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 823
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 821
Number of spheres polar: 272, nonpolar: 354, out of current total: 821
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -3.65985 16.25722 9.96264 29.27017 39.43499 59.34097
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 276
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 218
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 184
Spheres center of coords (x y z): 4.81378032608696 17.8897914130435 50.675174673913
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.1865295339582
Final number of output spheres is: 45
Number of polar spheres: 9
Number of nonpolar spheres: 25
Number of spheres that are near neither polar nor nonpolar receptor atoms: 11
Final number of spheres that are from crystallographic ligand: 28