usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 6.57439285714286 20.0738214285714 49.2818571428571
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1293
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 824
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 822
Number of spheres polar: 274, nonpolar: 351, out of current total: 822
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -3.40818 16.56329 10.09189 29.50543 39.40569 59.27238
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 442
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 382
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 326
Spheres center of coords (x y z): 5.53307386503067 18.4850433742331 50.9306584355828
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.09751276280272
Final number of output spheres is: 60
Number of polar spheres: 13
Number of nonpolar spheres: 34
Number of spheres that are near neither polar nor nonpolar receptor atoms: 13
Final number of spheres that are from crystallographic ligand: 28