usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 138.0289 70.898 -22.9621333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1016 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 542 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 542 Number of spheres polar: 210, nonpolar: 231, out of current total: 542 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 128.17191 147.94124 61.41061 80.57593 -32.67935 -12.97266 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 277 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 231 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 217 Spheres center of coords (x y z): 137.361906589862 70.4859862211982 -21.109018156682 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.55142474095386 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 30