usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 16.9107407407407 -12.5541111111111 22.6427037037037 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1339 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 739 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 737 Number of spheres polar: 236, nonpolar: 307, out of current total: 737 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.11306 26.90718 -22.29288 -3.05053 12.66241 32.49195 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 405 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 349 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 285 Spheres center of coords (x y z): 17.0923227719298 -14.4040093333333 20.8035896140351 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.91788023906126 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 27