usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 16.5831111111111 -12.2657777777778 22.486962962963 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1249 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 780 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 779 Number of spheres polar: 234, nonpolar: 345, out of current total: 779 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.82019 26.44532 -22.13269 -3.50029 12.54000 32.43626 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 432 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 369 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 355 Spheres center of coords (x y z): 16.4952795211268 -15.1802412112676 21.7414776619718 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.03003397113677 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 27