usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 16.4815185185185 -12.2582592592593 22.395037037037 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1244 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 780 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 778 Number of spheres polar: 278, nonpolar: 297, out of current total: 778 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.50336 26.42053 -22.12621 -3.60050 12.42459 32.21631 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 406 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 356 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 325 Spheres center of coords (x y z): 17.2408651384616 -14.8379746461538 21.8019598461538 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.78790377938131 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 27