usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 15.7961739130435 -12.1027826086957 21.8649565217391 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1342 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 853 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 850 Number of spheres polar: 298, nonpolar: 331, out of current total: 850 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.86885 25.76405 -22.00019 -2.55728 11.93311 31.84486 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 450 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 396 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 360 Spheres center of coords (x y z): 17.0872322777778 -15.0389722222222 21.3815503333333 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.23344707992351 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 23