usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 16.3982083333333 -12.037 22.3034166666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1330 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 784 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 782 Number of spheres polar: 267, nonpolar: 330, out of current total: 782 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.41388 26.28769 -21.88173 -3.18370 12.36334 32.28104 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 271 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 215 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 198 Spheres center of coords (x y z): 17.0890366666667 -15.392080959596 22.2833483838384 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.22366021257019 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 24