usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 15.629875 -12.2315833333333 22.04425 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1231 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 774 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 773 Number of spheres polar: 254, nonpolar: 315, out of current total: 773 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.69325 25.59488 -22.16094 -3.34254 12.08410 32.03544 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 259 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 212 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 181 Spheres center of coords (x y z): 16.5950485635359 -14.4442506077348 20.2004328729282 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.54214488002297 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 24