usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 16.7215714285714 -12.5933571428571 22.7441785714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1382 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 833 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 833 Number of spheres polar: 285, nonpolar: 343, out of current total: 833 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.14824 26.69165 -22.56380 -3.31632 12.77464 32.53511 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 286 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 232 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 219 Spheres center of coords (x y z): 16.9774744748858 -15.4555003196347 21.7571567123288 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.96146701056646 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 28