usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 15.6155454545455 -12.0961818181818 21.5117727272727 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1141 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 806 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 805 Number of spheres polar: 314, nonpolar: 306, out of current total: 805 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.64981 25.55522 -21.95505 -3.30499 11.53979 31.28494 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 408 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 356 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 311 Spheres center of coords (x y z): 17.0455215434084 -14.3747771382637 20.4456535048232 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.67668385797908 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 22