usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 15.5942608695652 -12.2053913043478 22.1314347826087 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1360 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 829 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 816 Number of spheres polar: 283, nonpolar: 317, out of current total: 816 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.68773 25.52412 -21.89955 -3.48169 12.13751 32.07876 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 436 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 379 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 356 Spheres center of coords (x y z): 17.0171172752809 -15.1588820224719 21.6598405898876 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.31394569233348 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 23