usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 16.7558518518519 -12.306037037037 22.4514444444444 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1345 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 819 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 817 Number of spheres polar: 297, nonpolar: 325, out of current total: 817 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.19500 26.61260 -22.11220 -2.35495 12.59095 32.28794 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 430 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 367 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 335 Spheres center of coords (x y z): 17.3138329552239 -14.9419153432836 22.1638488656716 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.64438357125703 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 27