usefragsph not on There are 11 ligand heavy atoms Ligand center of coords (x y z): 10.7770909090909 17.7718181818182 11.5193636363636 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1052 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 680 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 678 Number of spheres polar: 324, nonpolar: 268, out of current total: 678 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.00256 20.66074 7.88957 27.68966 1.57138 21.49808 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 296 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 254 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 181 Spheres center of coords (x y z): 13.5056144751381 16.0708819337017 14.1285559116022 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.47788906143397 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 11